PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g03220
Common NameGSCOC_T00026004001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 228aa    MW: 25637.1 Da    PI: 6.1499
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g03220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.9e-56501531101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Cc03_g03220  50 QLQNFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 147
                  89******9999************************************************************************************** PP

        NF-YC  96 vprdel 101
                  vpr++l
  Cc03_g03220 148 VPREDL 153
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.64E-3438144IPR009072Histone-fold
PfamPF008082.6E-2272135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-3873150IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDQQGNGQLP AGPVQAPQTA GLPASSTQMA QHQLAYQHIH QQQQQQLQQQ LQNFWANQYQ  60
EIEQVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRAWNHTEE  120
NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKEEMLAS IPRGPLPVGG PAEGVPYYYM  180
SAQSAPPVGA PGMYMGKPVD QALYGHQPRP YMPQQMWPHQ QQPPADS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C2e-4160150294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-4160150294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C2e-41351503119HapE
4g92_C2e-41351503119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590084.11e-127PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X2
RefseqXP_016480555.11e-127PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X2
RefseqXP_016480556.11e-127PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X2
SwissprotQ8L4B22e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A068TUH81e-168A0A068TUH8_COFCA; Uncharacterized protein
STRINGSolyc01g079870.2.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-81nuclear factor Y, subunit C9